Author

Alex Popinga

Colorado State UniversityORCID 0000-0002-0152-5728Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 1 Cell Biology· 1

Signature Assays, Organisms & Methods

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Organism:human· 2 Approach:statistical model· 2 Approach:Bayesian inference· 1 Research Focus:cell type annotation· 1 Research Focus:differential expression· 1 Assay:fluorescence / live-cell microscopy· 1 Research Focus:gene regulatory network inference· 1 Assay:scRNA-seq· 1

Frequent Co-Authors

Brian E. MunskyiD· 2 shared Dmitri SvetloviD· 1 shared Eric RoniD· 1 shared Huy D. VoiD· 1 shared Jack FormaniD· 1 shared Jack R Forman· 1 shared Linda S. Forero-QuinteroiD· 1 shared Luis U. AguileraiD· 1 shared

Activity by Year

2024-2026 · peak 1/yr

Co-Author Collaboration Network

8 top collaborators · 16 mutual co-author links

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2 shared papersBioinformatics

Brian E. MunskyORCID

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2 papers

Recent·Most cited

The Stochastic System Identification Toolkit (SSIT) to model, fit, predict, and design experiments

Alex Popinga, Jack R Forman, Dmitri Svetlov, Huy D. Vo, Brian E. Munsky

The paper introduces SSIT, a toolkit for stochastic modeling and analysis, demonstrating its application on yeast and breast cancer datasets.

bioRxiv · Mar 8, 2026 · PreprintBioinformatics

Endogenous single-cell experiments and stochastic modeling reveal control mechanisms of glucocorticoid receptor dynamics and DUSP1 transcription

Eric Ron, Alex Popinga, Jack Forman, Luis U. Aguilera, Linda S. Forero-Quintero, Brian E. Munsky

The paper uses single-cell experiments and stochastic modeling to uncover mechanisms of GR dynamics and DUSP1 transcription regulation in response to glucocorticoids.

Biophysical Journal · Feb 1, 2024Peer-reviewedCell Biology