Author

Ron Amit

Technion – Israel Institute of TechnologyORCID 0000-0002-0255-490XUnclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 2

Signature Assays, Organisms & Methods

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Research Focus:cell type annotation· 2 Organism:human· 2 Assay:scRNA-seq· 2 Research Focus:clustering· 1 Approach:contrastive learning· 1 Research Focus:differential expression· 1 Research Focus:gene regulatory network inference· 1 Approach:machine learning (classical)· 1

Frequent Co-Authors

Keren YizhakiD· 2 shared Ofir ShoreriD· 2 shared Asaf PinhasiiD· 1 shared

Activity by Year

2026-2026 · peak 2/yr

Co-Author Collaboration Network

3 top collaborators · 3 mutual co-author links

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2 shared papersBioinformatics

Keren YizhakORCID

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2 papers

Recent·Most cited

Revealing pan-cancer clonal niches of T cells from single-cell RNA sequencing using contrastive learning

Ofir Shorer, Asaf Pinhasi, Ron Amit, Keren Yizhak

CloneTrast uses contrastive learning to infer T-cell clonal niches from single-cell RNA-seq, identifying NK-like niches linked to poor immunotherapy response across cancers.

bioRxiv · Oct 14, 2026 · PreprintBioinformatics

scXpand: Pan-cancer detection of T-cell clonal expansion from single-cell RNA sequencing without paired single-cell TCR sequencing

Ofir Shorer, Ron Amit, Keren Yizhak

scXpand detects T-cell clonal expansion in cancer from scRNA-seq without TCR sequencing, showing accuracy across tissues and subtypes.

Cell Genomics · Aug 7, 2026Peer-reviewedBioinformatics