Author

Dang Nguyen

Deakin UniversityORCID 0000-0002-0401-988XUnclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Approach:deep learning· 2 Research Focus:differential expression· 2 Research Focus:gene regulatory network inference· 2 Approach:statistical model· 2 Assay:ChIP-seq· 1 Assay:DNA methylation· 1

Frequent Co-Authors

Sunil GuptaiD· 2 shared Svetha VenkateshiD· 2 shared Thomas P. QuinniD· 2 shared Phuoc Nguyen· 1 shared

Activity by Year

2020-2021 · peak 1/yr

Co-Author Collaboration Network

4 top collaborators · 6 mutual co-author links

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2 shared papersBioinformatics

Sunil GuptaORCID

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2 papers

Recent·Most cited

A Neural Model of RNA Splicing: Learning Motif Distances with Self-Attention and Toeplitz Max Pooling

Thomas P. Quinn, Dang Nguyen, Sunil Gupta, Svetha Venkatesh

This paper introduces a neural network model called TATA to learn distance-dependent motif interactions in RNA splicing using self-attention and Toeplitz max pooling, and applies it to identify cis-regulatory elements interacting with splice sites.

bioRxiv · May 24, 2021 · PreprintBioinformatics

Learning Distance-Dependent Motif Interactions: An Explicitly Interpretable Neural Model of Genomic Events

Thomas P. Quinn, Dang Nguyen, Phuoc Nguyen, Sunil Gupta, Svetha Venkatesh

The paper introduces HyperXPair, an interpretable neural model that learns distance-dependent motif interactions for transcription initiation and RNA splicing.

bioRxiv · Aug 27, 2020 · PreprintBioinformatics