Author

Sunil Gupta

Deakin UniversityORCID 0000-0002-4669-9940Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Research Focus:gene regulatory network inference· 3 Approach:statistical model· 3 Approach:deep learning· 2 Research Focus:differential expression· 2 Research Focus:benchmarking· 1 Assay:ChIP-seq· 1 Research Focus:database / resource· 1 Assay:DNA methylation· 1

Frequent Co-Authors

Svetha VenkateshiD· 3 shared Thomas P. QuinniD· 3 shared Dang NguyeniD· 2 shared Haripriya HarikumariD· 1 shared Phuoc Nguyen· 1 shared Santu RanaiD· 1 shared

Activity by Year

2020-2021 · peak 2/yr

Co-Author Collaboration Network

6 top collaborators · 11 mutual co-author links

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3 shared papersBioinformatics

Svetha VenkateshORCID

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3 papers

Recent·Most cited

A Neural Model of RNA Splicing: Learning Motif Distances with Self-Attention and Toeplitz Max Pooling

Thomas P. Quinn, Dang Nguyen, Sunil Gupta, Svetha Venkatesh

This paper introduces a neural network model called TATA to learn distance-dependent motif interactions in RNA splicing using self-attention and Toeplitz max pooling, and applies it to identify cis-regulatory elements interacting with splice sites.

bioRxiv · May 24, 2021 · PreprintBioinformatics

Personalized single-cell networks: a framework to predict the response of any gene to any drug for any patient

Haripriya Harikumar, Thomas P. Quinn, Santu Rana, Sunil Gupta, Svetha Venkatesh

The paper predicts gene-drug responses for individual patients by integrating single-cell expression data with drug-response databases using a dual-channel random walk method.

bioRxiv · Jan 11, 2021 · PreprintSystems Biology

Learning Distance-Dependent Motif Interactions: An Explicitly Interpretable Neural Model of Genomic Events

Thomas P. Quinn, Dang Nguyen, Phuoc Nguyen, Sunil Gupta, Svetha Venkatesh

The paper introduces HyperXPair, an interpretable neural model that learns distance-dependent motif interactions for transcription initiation and RNA splicing.

bioRxiv · Aug 27, 2020 · PreprintBioinformatics