Author

Patrick Schinke

Helmholtz MunichORCID 0000-0002-0422-3215Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 2

Signature Assays, Organisms & Methods

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Approach:deep learning· 2 Research Focus:benchmarking· 1 Assay:bulk RNA-seq· 1 Research Focus:database / resource· 1 Research Focus:gene regulatory network inference· 1 Organism:human· 1 Approach:machine learning (classical)· 1 Assay:metagenomics· 1

Frequent Co-Authors

Annalisa MarsicoiD· 2 shared Giulia CantiniiD· 2 shared Lambert MoyoniD· 2 shared Marc HorlacheriD· 2 shared Ernesto Elorduy VergaraiD· 1 shared Florian Bittner· 1 shared Julian Hesse· 1 shared Mahsa GhanbariiD· 1 shared

Activity by Year

2021-2023 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 37 mutual co-author links

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2 shared papersBioinformatics

Annalisa MarsicoORCID

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2 papers

Recent·Most cited

BioinformaticsBriefings in BioinformaticsPeer-reviewedAug 7, 2023

A Systematic Benchmark of Machine Learning Methods for Protein-RNA Interaction Prediction

Marc Horlacher, Giulia Cantini, Julian Hesse…·Annalisa Marsico

This study benchmarks 11 machine learning methods for predicting in vivo RBP-RNA interactions across hundreds of CLIP-seq datasets and RBPs.

30 citations

proteomicsmetagenomics

𝕏 PostBluesky

BioinformaticsbioRxivPreprintDec 22, 2021

Computational Mapping of the Human-SARS-CoV-2 Protein-RNA Interactome

Marc Horlacher, Svitlana Oleshko, Yue Hu…·Annalisa Marsico

The paper maps human RBP-viral RNA interactions for SARS-CoV-2 and related coronaviruses using deep learning, identifies variant impacts, and links RBPs to potential biomarkers.

3 citations

humanbulk RNA-seq

𝕏 PostBluesky