Author

Svitlana Oleshko

Helmholtz Munich

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 2

Signature Assays, Organisms & Methods

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Research Focus:benchmarking· 1 Assay:bulk RNA-seq· 1 Approach:contrastive learning· 1 Research Focus:database / resource· 1 Approach:deep learning· 1 Research Focus:gene regulatory network inference· 1 Approach:graph neural network· 1 Organism:human· 1

Frequent Co-Authors

Annalisa MarsicoiD· 2 shared Yue HuiD· 2 shared Ernesto Elorduy VergaraiD· 1 shared Florian Bittner· 1 shared Giulia CantiniiD· 1 shared Hui ChengiD· 1 shared Jian TangiD· 1 shared Lambert MoyoniD· 1 shared

Activity by Year

2021-2024 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 33 mutual co-author links

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2 shared papersBioinformatics

Annalisa MarsicoORCID

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2 papers

Recent·Most cited

BioinformaticsbioRxivPreprintJun 17, 2024

Path-based reasoning in biomedical knowledge graphs with BioPathNet

Yue Hu, Svitlana Oleshko, Samuele Firmani…·Annalisa Marsico

BioPathNet improves link prediction in biomedical knowledge graphs by using path-based reasoning, outperforming existing methods and identifying novel drug indications and gene interactions.

7 citations

graph neural networkcontrastive learning

𝕏 PostBluesky

BioinformaticsbioRxivPreprintDec 22, 2021

Computational Mapping of the Human-SARS-CoV-2 Protein-RNA Interactome

Marc Horlacher, Svitlana Oleshko, Yue Hu…·Annalisa Marsico

The paper maps human RBP-viral RNA interactions for SARS-CoV-2 and related coronaviruses using deep learning, identifies variant impacts, and links RBPs to potential biomarkers.

3 citations

humanbulk RNA-seq

𝕏 PostBluesky