Author

Sagorika Nag

University of California, Santa CruzORCID 0000-0002-0427-6835Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 1 Genomics· 1

Signature Assays, Organisms & Methods

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Research Focus:genome assembly· 2 Organism:human· 2 Research Focus:benchmarking· 1 Research Focus:differential expression· 1 Approach:experimental assay· 1 Research Focus:gene regulatory network inference· 1 Assay:long-read sequencing· 1 Assay:scRNA-seq· 1

Frequent Co-Authors

Benedict PateniD· 2 shared Glenn HickeyiD· 2 shared Adam M. NovakiD· 1 shared Adam M. PhillippyiD· 1 shared Alexandra G. BeilinaiD· 1 shared Andrew SingletoniD· 1 shared Andrew W. CarrolliD· 1 shared Arang RhieiD· 1 shared

Activity by Year

2025-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 33 mutual co-author links

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2 shared papersGenomics

Benedict PatenORCID

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2 papers

Recent·Most cited

GenomicsbioRxivPreprintMar 12, 2026

The complete genome of the KOLF2.1J reference iPSC line

Pilar Álvarez Jerez, Arang Rhie, Juhyun Kim…·Cornelis Blauwendraat

The paper generates and characterizes a custom genome assembly for the KOLF2.1J iPSC line to improve genomic analysis accuracy compared to standard references.

3 citations

humanwhole-genome sequencing

𝕏 PostBluesky

BioinformaticsbioRxivPreprintSep 29, 2025

Rapid, accurate long- and short-read mapping to large pangenome graphs with vg Giraffe

Xian H. Chang, Adam M. Novak, Jordan M. Eizenga…·Benedict Paten

The paper updates Giraffe to map both long and short reads to large pangenome graphs, showing improved speed and accuracy compared to existing tools.

9 citations

humanlong-read sequencing

𝕏 PostBluesky