Author

Stéphane Declerck

UCLouvainORCID 0000-0002-0459-5975Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Approach:benchmark study· 2 Organism:bacteria (other)· 1 Research Focus:benchmarking· 1 Research Focus:gene regulatory network inference· 1 Assay:metagenomics· 1 Research Focus:phylogenetics / evolution· 1 Approach:statistical model· 1 Assay:whole-genome sequencing· 1

Frequent Co-Authors

Denis BaurainiD· 2 shared Luc CornetiD· 2 shared Valérian LupoiD· 2 shared Annick WilmotteiD· 1 shared Benoit DurieuiD· 1 shared Damien SirjacobsiD· 1 shared David ColignoniD· 1 shared Elizabet D’hoogeiD· 1 shared

Activity by Year

2022-2022 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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2 shared papersBioinformatics

Denis BaurainORCID

Mutual co-authors in cluster

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2 papers

Recent·Most cited

The GEN-ERA toolbox: unified and reproducible workflows for research in microbial genomics .

Luc Cornet, Benoit Durieu, Frederik Baert, Elizabet D’hooge, David Colignon, Loïc Meunier, Valérian Lupo, Ilse Cleenwerck, Heide‐Marie Daniel, Leen Rigouts, Damien Sirjacobs, Stéphane Declerck, Peter A. R. Vandamme, Annick Wilmotte, Denis Baurain, Pierre Becker

The paper introduces the GEN-ERA toolbox, a unified bioinformatics workflow for microbial genomics that enables reproducible phylogenetic and metabolic analyses on bacteria and small eukaryotes.

GigaScience · Dec 28, 2022Peer-reviewedBioinformatics

CRitical Assessment of genomic COntamination detection at several Taxonomic ranks (CRACOT)

Luc Cornet, Valérian Lupo, Stéphane Declerck, Denis Baurain

CRACOT benchmarks six contamination detection tools across six taxonomic ranks, finding poor precision and recommending tool combination for better accuracy.

bioRxiv · Nov 14, 2022 · PreprintBioinformatics