Author

Yuanyuan Zhang

Purdue University West LafayetteORCID 0000-0002-0565-6813Unclaimed ORCID profile · follow to get notified of new preprints

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Yuanyuan Zhang8 papers · Purdue University West Lafayette

Biology Disciplines

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Bioinformatics· 2

Signature Assays, Organisms & Methods

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Approach:deep learning· 2 Assay:ATAC-seq· 1 Research Focus:benchmarking· 1 Assay:ChIP-seq· 1 Research Focus:database / resource· 1 Research Focus:dimensionality reduction· 1 Assay:DNA methylation· 1 Research Focus:gene regulatory network inference· 1

Frequent Co-Authors

Sheng WangiD· 2 shared William Stafford NobleiD· 2 shared Xiao WangiD· 2 shared Anupama JhaiD· 1 shared Huaizhi QuiD· 1 shared Sergei R. DoulatoviD· 1 shared Shengqi HangiD· 1 shared Suhita RayiD· 1 shared

Activity by Year

2025-2026 · peak 1/yr

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10 top collaborators · 35 mutual co-author links

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2 shared papersBioinformatics

Sheng WangORCID

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2 papers

Recent·Most cited

BioinformaticsNature MethodsPeer-reviewedJun 15, 2026

A generalizable Hi-C foundation model for chromatin architecture, single-cell and multi-omics analysis across species

Xiao Wang, Yuanyuan Zhang, Suhita Ray…·Sheng Wang

HiCFoundation is a Hi-C-based model that integrates chromatin structure with epigenomic regulation across species, improving analysis of 3D genome architecture and single-cell data.

6 citationstop 3%

multiple speciesHi-C

BioinformaticsbioRxivPreprintJan 10, 2025

CryoNeRF: reconstruction of homogeneous and heterogeneous cryo-EM structures using neural radiance field

Huaizhi Qu, Xiao Wang, Yuanyuan Zhang…·Tianlong Chen

CryoNeRF improves cryo-EM structure reconstruction by handling both homogeneous and heterogeneous data, achieving better performance than existing methods.

1 citation

protein structuredeep learning