Author

Josh Cudby

University of CambridgeORCID 0000-0002-0636-9314Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Research Focus:genome assembly· 1 Approach:optimal transport· 1 Assay:whole-genome sequencing· 1

Frequent Co-Authors

Chenxi ZhouiD· 1 shared James BonfieldiD· 1 shared Richard Michael DurbiniD· 1 shared Sergii StrelchukiD· 1 shared

Activity by Year

2025-2025 · peak 1/yr

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4 top collaborators · 6 mutual co-author links

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1 shared paperGenomics

Chenxi ZhouORCID

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1 paper

Recent·Most cited

GenomicsbioRxivPreprintAug 6, 2025

Pangenome-guided sequence assembly via binary optimisation

Josh Cudby, James Bonfield, Chenxi Zhou…·Sergii Strelchuk

This paper introduces a pangenome-guided sequence assembly framework that reduces contigs in complex regions using graph traversal optimisation, with potential for quantum computing implementation.

DOI 10.1101/2025.08.06.668889

whole-genome sequencingoptimal transport

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