Chromosome-level scaffolding of haplotype-resolved assemblies using Hi-C data without reference genomes
Xiaofei Zeng, Zili Yi, Xingtan Zhang…·Guoan Chen
This paper introduces HapHiC, a reference-independent allele-aware scaffolding tool that improves chromosome assignment and contig ordering, and applies it to construct a haplotype-resolved allotriploid genome.