Author

Bünyamin Şen

Hacettepe UniversityORCID 0000-0002-0853-4731Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Research Focus:benchmarking· 2 Research Focus:database / resource· 2 Approach:statistical model· 2 Approach:large language model· 1 Assay:multiome· 1

Frequent Co-Authors

Dénes TüreiiD· 2 shared Erva UlusoyiD· 2 shared Julio Sáez-RodrígueziD· 2 shared Melih DarcaniD· 2 shared Tunca DoğaniD· 2 shared Ahmet Süreyya RifaioğluiD· 1 shared Alberto ValdeolivasiD· 1 shared Atabey ÜnlüiD· 1 shared

Activity by Year

2025-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 41 mutual co-author links

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2 shared papersBioinformatics

Dénes TüreiORCID

Mutual co-authors in cluster

Author profile →

2 papers

Recent·Most cited

CROssBARv2: A Unified Computational Framework for Heterogeneous Biomedical Data Representation and LLM-Driven Exploration

Bünyamin Şen, Erva Ulusoy, Melih Darcan, Mert Ergun, Sebastian Lobentanzer, Ahmet Süreyya Rifaioğlu, Dénes Türei, Julio Sáez-Rodríguez, Tunca Doğan

CROssBARv2 integrates heterogeneous biomedical data into a knowledge graph with embeddings and LLM-driven tools for predictive modeling and question-answering.

bioRxiv · Apr 15, 2026 · PreprintBioinformatics

OmniPath: integrated knowledgebase for multi-omics analysis

Dénes Türei, Jonathan Schaul, Nicolàs Palacio‐Escat, Balázs Bohár, Yunfan Bai, Francesco Ceccarelli, Elif Çevrim, Macabe Daley, Melih Darcan, Daniel Dimitrov, Tunca Doğan, Daniel Domingo‐Fernándéz, Aurélien J. F. Dugourd, Attila Gábor, Lejla Potari-Gul, , Julio Sáez-Rodríguez

OmniPath integrates molecular knowledge from 168 resources to support multi-omics analysis, offering curated data, predictions, and tools for causal modeling across bulk, single-cell, and spatial data.

Nucleic Acids Research · Nov 18, 2025Peer-reviewedBioinformatics