Author

Elif Çevrim

Hacettepe UniversityORCID 0000-0001-7797-8080Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Research Focus:benchmarking· 2 Approach:benchmark study· 1 Research Focus:database / resource· 1 Assay:multiome· 1 Assay:protein sequence· 1 Approach:statistical model· 1

Frequent Co-Authors

Erva UlusoyiD· 2 shared Tunca DoğaniD· 2 shared Alberto ValdeolivasiD· 1 shared Ardan YılmaziD· 1 shared Atabey ÜnlüiD· 1 shared Attila GáboriD· 1 shared Aurélien J. F. DugourdiD· 1 shared Balázs BoháriD· 1 shared

Activity by Year

2025-2025 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 38 mutual co-author links

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2 shared papersBioinformatics

Erva UlusoyORCID

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2 papers

Recent·Most cited

BioinformaticsNucleic Acids ResearchPeer-reviewedNov 18, 2025

OmniPath: integrated knowledgebase for multi-omics analysis

Dénes Türei, Jonathan Schaul, Nicolàs Palacio‐Escat…·Julio Sáez-Rodríguez

OmniPath integrates molecular knowledge from 168 resources to support multi-omics analysis, offering curated data, predictions, and tools for causal modeling across bulk, single-cell, and spatial data.

23 citationstop 2%

multiomestatistical model

𝕏 PostBluesky

BioinformaticsMethods in molecular biologyPeer-reviewedJan 1, 2025

A Benchmarking Platform for Assessing Protein Language Models on Function-related Prediction Tasks

Elif Çevrim, Melih Gökay Yiğit, Erva Ulusoy…·Tunca Doğan

This study introduces PROBE, a benchmarking framework for evaluating protein representations on function-related tasks, demonstrating its use with ESM2 and three multimodal PLMs.

4 citationstop 2%

protein sequencebenchmark study

𝕏 PostBluesky