Author

Anna Saranti

Medical University of GrazORCID 0000-0002-1085-8428Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 3

Signature Assays, Organisms & Methods

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Assay:bulk RNA-seq· 2 Research Focus:differential expression· 2 Assay:DNA methylation· 2 Research Focus:benchmarking· 1 Research Focus:cell type annotation· 1 Approach:deep learning· 1 Approach:experimental assay· 1 Organism:human· 1

Frequent Co-Authors

Andreas HolzingeriD· 3 shared Bastian PfeiferiD· 3 shared Anne-Christin HauschildiD· 2 shared Afan Secic· 1 shared Alessa AngerschmidiD· 1 shared Dominik HeideriD· 1 shared Hryhorii CheredaiD· 1 shared Jacqueline Michelle Beinecke· 1 shared

Activity by Year

2022-2023 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 30 mutual co-author links

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3 shared papersBioinformatics

Andreas HolzingerORCID

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3 papers

Recent·Most cited

Ensemble-GNN: federated ensemble learning with graph neural networks for disease module discovery and classification

Bastian Pfeifer, Hryhorii Chereda, Roman Martin, Anna Saranti, Sandra Clemens, Anne-Christin Hauschild, Tim Beißbarth, Andreas Holzinger, Dominik Heider

Ensemble-GNN enables federated, ensemble-based graph neural networks for disease module discovery using patient-specific PPI networks and omics data.

Bioinformatics · Nov 1, 2023Peer-reviewedBioinformatics

CLARUS: An Interactive Explainable AI Platform for Manual Counterfactuals in Graph Neural Networks

Jacqueline Michelle Beinecke, Anna Saranti, Alessa Angerschmid, Bastian Pfeifer, Vanessa Klemt, Andreas Holzinger, Anne-Christin Hauschild

CLARUS is an interactive explainable AI platform for GNNs that allows clinicians to validate, modify, and retrain models using patient-specific biological networks.

bioRxiv · Nov 21, 2022 · PreprintBioinformatics

GNN-SubNet: disease subnetwork detection with explainable Graph Neural Networks

Bastian Pfeifer, Afan Secic, Anna Saranti, Andreas Holzinger

This paper introduces GNN-SubNet, an explainable graph neural network framework for detecting disease subnetworks using patient-specific protein-protein interaction networks enriched with molecular data.

Bioinformatics · Aug 24, 2022Peer-reviewedBioinformatics