Author

Megan Rose Paul

University of California San DiegoORCID 0000-0002-1094-6049Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

Click to filter author papers

Genomics· 1 Pathology· 1

Signature Assays, Organisms & Methods

Click to filter · or open tag

Organism:human· 2 Research Focus:cell type annotation· 1 Research Focus:clustering· 1 Approach:deep learning· 1 Research Focus:differential expression· 1 Assay:imaging· 1 Approach:statistical model· 1 Assay:whole-genome sequencing· 1

Frequent Co-Authors

Lukas CháveziD· 2 shared Owen S. ChapmaniD· 2 shared Rishaan KenkreiD· 2 shared Aditi DuttaiD· 1 shared Anamika Yadav· 1 shared Chinmay Sharma· 1 shared Danh-Tai HoangiD· 1 shared Denise M. MalickiiD· 1 shared

Activity by Year

2024-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 39 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

2 shared papersGenomics

Lukas ChávezORCID

Mutual co-authors in cluster

Author profile →

2 papers

Recent·Most cited

GenomicsGenome MedicinePeer-reviewedMay 28, 2026

Preservation and Clonal Behavior of Extrachromosomal DNA in Patient-Derived Xenograft Models of Childhood Cancers

Rishaan Kenkre, Owen S. Chapman, Eugene Yui-Ching Chow…·Lukas Chávez

This study compares ecDNA prevalence, conservation, and clonal dynamics in PDX models and primary tumors of childhood cancers, finding high sequence conservation and selective growth advantage of ecDNA-positive clones.

DOI 10.1186/s13073-026-01676-0

humanwhole-genome sequencing

𝕏 PostBluesky

PathologybioRxivPreprintNov 13, 2024

ecPath detects ecDNA in tumors from histopathology images

Mudra Choudhury, Lihe Liu, Anamika Yadav…·Sanju Sinha

ecPath detects ecDNA in tumors using H&E images, achieving good performance in predicting ecDNA status and identifying poor prognoses in low grade glioma patients.

4 citations

humanimaging

𝕏 PostBluesky