Author

Yeon Ji Kim

Duke UniversityORCID 0000-0002-1118-5026Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Developmental Biology· 1 Microbiology· 1

Signature Assays, Organisms & Methods

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Approach:statistical model· 2 Research Focus:benchmarking· 1 Assay:bulk RNA-seq· 1 Research Focus:differential expression· 1 Assay:metagenomics· 1 Assay:proteomics· 1 Organism:zebrafish· 1

Frequent Co-Authors

A. Denene BlackwoodiD· 1 shared Akila HarishchandraiD· 1 shared Anthony A. FodoriD· 1 shared Colin R. LickwariD· 1 shared Emily M. GreeniD· 1 shared Heather Hemric· 1 shared Jake Nash· 1 shared Jason ArnoldiD· 1 shared

Activity by Year

2025-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 21 mutual co-author links

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1 shared paperMicrobiology

A. Denene BlackwoodORCID

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2 papers

Recent·Most cited

MicrobiologybioRxivPreprintMay 15, 2026

Benchmarking Short-Read ITS2 and Full-Length ITS Sequencing Reveals Pipeline-Dependent Biases in Indoor Fungal Community Profiling

Mengyi Dong, A. Denene Blackwood, Megan E. J. Lott…·Rachel T. Noble

This paper compares short-read ITS2 and long-read full-length ITS sequencing for fungal community profiling, finding that full-length ITS improves taxonomic resolution and ecological inference.

DOI 10.64898/2026.05.15.725464

metagenomicsstatistical model

𝕏 PostBluesky

Developmental BiologyMolecular EcologyPeer-reviewedNov 5, 2025

The External Microbiome Communicates with the Developing Zebrafish (Danio rerio) Embryo Through the Chorion and Influences Developmental Trajectory

Emily M. Green, Akila Harishchandra, Colin R. Lickwar…·Nishad Jayasundara

This study shows the external microbiome influences zebrafish embryonic development through the chorion, affecting transcriptomics, proteomics, and physiological processes.

3 citations

zebrafishproteomics

𝕏 PostBluesky