Author

Andrew J Ashford

Oregon Health & Science UniversityORCID 0000-0002-1234-2118Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 1 Genomics· 1

Signature Assays, Organisms & Methods

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Organism:human· 2 Assay:scRNA-seq· 2 Research Focus:batch correction / integration· 1 Research Focus:benchmarking· 1 Assay:CITE-seq· 1 Research Focus:database / resource· 1 Research Focus:differential expression· 1 Research Focus:gene regulatory network inference· 1

Frequent Co-Authors

Emek DemiriD· 2 shared Alex LapadatiD· 1 shared Julia SomersiD· 1 shared Olga H. NikolovaiD· 1 shared Trevor EnrightiD· 1 shared

Activity by Year

2025-2026 · peak 1/yr

Co-Author Collaboration Network

5 top collaborators · 7 mutual co-author links

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2 shared papersBioinformatics

Emek DemirORCID

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2 papers

Recent·Most cited

BioinformaticsbioRxivPreprintAug 12, 2026

scOPE identifies which driver-associated expression programs transfer from bulk tumors to single cells

Andrew J Ashford, Alex Lapadat, Emek Demir

scOPE transfers driver-associated expression programs from bulk tumors to single cells, identifying selective programs with high predictive accuracy.

DOI 10.64898/2026.07.24.740598

𝕏 PostBluesky

GenomicsbioRxivPreprintFeb 28, 2025

Unifying multimodal single-cell data with a mixture-of-experts β-variational autoencoder framework

Andrew J Ashford, Trevor Enright, Julia Somers…·Emek Demir

UniVI integrates multimodal single-cell data using a mixture-of-experts β-variational autoencoder, improving cross-modal alignment and label transfer across various data types and study designs.

DOI 10.1101/2025.02.28.640429

𝕏 PostBluesky