Author

Xue Li

China University of Petroleum, East ChinaORCID 0000-0002-1489-3095Unclaimed ORCID profile · follow to get notified of new preprints

Additional preprints under this name without ORCID

Xue Li12 papers · Broad Institute

Biology Disciplines

Click to filter author papers

Bioinformatics· 2

Signature Assays, Organisms & Methods

Click to filter · or open tag

Approach:deep learning· 2 Assay:protein structure· 2 Research Focus:protein structure prediction· 2 Research Focus:benchmarking· 1 Approach:contrastive learning· 1 Research Focus:differential expression· 1 Approach:graph neural network· 1 Approach:transformer / foundation model· 1

Frequent Co-Authors

Jianmin WangiD· 2 shared Xiangyu MengiD· 2 shared Ben CaoiD· 1 shared Chunyan LiiD· 1 shared Enrico G. PetrettoiD· 1 shared Jiashun MaoiD· 1 shared Kyoung Tai NoiD· 1 shared Shuang WangiD· 1 shared

Activity by Year

2024-2025 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 29 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

2 shared papersBioinformatics

Jianmin WangORCID

Mutual co-authors in cluster

Author profile →

2 papers

Recent·Most cited

Predicting mutation-disease associations through protein interactions via deep learning

Xue Li, Ben Cao, Jianmin Wang, Xiangyu Meng, Shuang Wang, Yu Huang, Enrico G. Petretto, Tao Song

This paper constructs a mutation-disease dataset and proposes CGM to predict mutation-disease associations, identifying 22 unknown protein interaction pairs.

IEEE Journal of Biomedical and Health Informatics · Feb 13, 2025Peer-reviewedBioinformatics

Exploring the conformational ensembles of protein-protein complex with transformer-based generative model

Jianmin Wang, Xun Wang, Yanyi Chu, Chunyan Li, Xue Li, Xiangyu Meng, Yitian Fang, Kyoung Tai No, Jiashun Mao, Xiangxiang Zeng

This study uses a transformer-based generative model to generate novel protein-protein complex conformations from molecular dynamics simulations, enhancing conformational exploration.

Journal of Chemical Theory and Computation · May 30, 2024Peer-reviewedBioinformatics