Author

Stephany Orjuela

SIB Swiss Institute of BioinformaticsORCID 0000-0002-1508-461XUnclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 2 Genomics· 1

Signature Assays, Organisms & Methods

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Research Focus:differential expression· 3 Approach:statistical model· 3 Assay:DNA methylation· 2 Organism:human· 2 Research Focus:benchmarking· 1 Assay:bulk RNA-seq· 1 Research Focus:database / resource· 1 Approach:experimental assay· 1

Frequent Co-Authors

Mark D. RobinsoniD· 3 shared Giancarlo MarraiD· 2 shared Amit Kumar TiwariiD· 1 shared Charlotte SonesoniD· 1 shared Christoph GubleriD· 1 shared Dania MachlabiD· 1 shared Emanuel SonderiD· 1 shared Frans Olivier TheiD· 1 shared

Activity by Year

2019-2023 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 26 mutual co-author links

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3 shared papersBioinformatics

Mark D. RobinsonORCID

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3 papers

Recent·Most cited

Validation of hypermethylated DNA regions found in colorectal cancers as potential aging-independent biomarkers of precancerous colorectal lesions

Sija Sajibu, Emanuel Sonder, Amit Kumar Tiwari, Stephany Orjuela, Hannah R. Parker, Frans Olivier The, Christoph Gubler, Giancarlo Marra, Mark D. Robinson

The paper validates 30 DNA methylation markers that accurately distinguish precancerous colorectal lesions from normal mucosa across multiple datasets.

BMC Cancer · Oct 18, 2023Peer-reviewedGenomics

DAMEfinder: A Method to Detect Differential Allele-Specific Methylation

Stephany Orjuela, Dania Machlab, Mirco Menigatti, Giancarlo Marra, Mark D. Robinson

DAMEfinder detects differential allele-specific methylation by analyzing bisulfite sequencing data, distinguishing imprinted and non-imprinted regions and identifying cancer subtype signatures.

Epigenetics & Chromatin · Jun 1, 2020Peer-reviewedBioinformatics

ARMOR: an Automated Reproducible MOdular workflow for preprocessing and differential analysis of RNA-seq data

Stephany Orjuela, Ruizhu Huang, Katharina Hembach, Mark D. Robinson, Charlotte Soneson

ARMOR provides a modular, reproducible workflow for RNA-seq data analysis, covering preprocessing to differential expression and visualization.

G3 Genes Genomes Genetics · May 14, 2019Peer-reviewedBioinformatics