Author

Nejc Stopnišek

University of MariborORCID 0000-0002-1532-6826Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Organism:human· 2 Approach:statistical model· 2 Approach:biophysical modeling· 1 Assay:bulk RNA-seq· 1 Research Focus:cell type annotation· 1 Research Focus:clustering· 1 Research Focus:differential expression· 1 Research Focus:gene regulatory network inference· 1

Frequent Co-Authors

Maja RupnikiD· 2 shared Aleksander MahničiD· 1 shared Andrej Golle· 1 shared Marko MarhliD· 1 shared Rene MarkovičiD· 1 shared Stina Hedžet· 1 shared Tomaž AccettoiD· 1 shared

Activity by Year

2025-2026 · peak 1/yr

Co-Author Collaboration Network

7 top collaborators · 13 mutual co-author links

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2 shared papersMicrobiology

Maja RupnikORCID

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2 papers

Recent·Most cited

MicrobiologybioRxivPreprintJun 15, 2026

Distinct types of gut dysbiosis and oral-gut microbial signatures differentiate C. difficile, Campylobacter, and Salmonella infections: a cross-sectional study

Aleksander Mahnič, Rene Markovič, Marko Marhl…·Maja Rupnik

This study identifies distinct gut dysbiosis patterns and oral-gut microbial signatures for C. difficile, Campylobacter, and Salmonella infections using 16S rRNA gene sequencing and machine learning.

DOI 10.64898/2026.06.15.732290

humanbulk RNA-seq

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MicrobiologyBMC MicrobiologyPeer-reviewedFeb 26, 2025

Insights into Diversity, Host-Range, and Temporal Stability of Bacteroides and Phocaeicola Prophages

Nejc Stopnišek, Stina Hedžet, Tomaž Accetto, Maja Rupnik

This study characterizes prophages in Bacteroides and Phocaeicola using bioinformatic tools, revealing their diversity, broad host range, and temporal stability in the human gut.

7 citations

humanmetagenomics

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