Author

Ryo Yamada

Kyoto UniversityORCID 0000-0002-1587-630XUnclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 2 Genetic & Genomic Medicine· 1

Signature Assays, Organisms & Methods

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Approach:statistical model· 3 Organism:human· 2 Assay:bulk RNA-seq· 1 Research Focus:database / resource· 1 Research Focus:differential expression· 1 Research Focus:dimensionality reduction· 1 Assay:imaging· 1 Research Focus:trajectory inference· 1

Frequent Co-Authors

Fumihiko MatsudaiD· 2 shared Koichiro HigasaiD· 2 shared Takahisa KawaguchiiD· 2 shared Changhoon KimiD· 1 shared Chin-Yi ChengiD· 1 shared Daigo OkadaiD· 1 shared Dominic NelsoniD· 1 shared Izumi YamaguchiiD· 1 shared

Activity by Year

2019-2025 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 25 mutual co-author links

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2 shared papersGenetic & Genomic Medicine

Fumihiko MatsudaORCID

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3 papers

Recent·Most cited

Genetic & Genomic MedicineJournal of Human GeneticsPeer-reviewedNov 8, 2025

Whole-genome sequencing of 3,135 individuals representing the genetic diversity of the Japanese population

Koichiro Higasa, Yoichiro Kamatani, Takahisa Kawaguchi…·Fumihiko Matsuda

The paper sequenced 3,135 Japanese individuals to identify genetic variants and construct a reference haplotype, highlighting the need for diverse population inclusion in genetic catalogs.

3 citations

humanwhole-genome sequencing

𝕏 PostBluesky

BioinformaticsBiology OpenPeer-reviewedMar 4, 2021

Integrated Analysis of Cell Shape and Movement in Moving Frame

Yusri Dwi Heryanto, Chin-Yi Cheng, Yutaka Uchida…·Ryo Yamada

The paper proposes a method to integrate cell shape and movement analysis using a moving frame coordinate system to study their relationship over time.

5 citations

imagingstatistical model

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BioinformaticsbioRxivPreprintJun 18, 2019

LAVENDER: latent axes discovery from multiple cytometry samples with non-parametric divergence estimation and multidimensional scaling reconstruction

Naotoshi Nakamura, Daigo Okada, Kazuya Setoh…·Ryo Yamada

LAVENDER identifies latent axes of variability in cytometry data by estimating non-parametric divergence and reconstructing samples in a new coordinate space, revealing biological insights from immunological datasets.

3 citations

humanbulk RNA-seq

𝕏 PostBluesky