Author

Shada Abuhattum

Max Planck Institute for the Science of LightORCID 0000-0002-1672-2767Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 1 Biophysics· 1 Neuroscience· 1

Signature Assays, Organisms & Methods

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Organism:human· 2 Assay:imaging· 2 Organism:zebrafish· 2 Research Focus:benchmarking· 1 Research Focus:cell type annotation· 1 Approach:deep learning· 1 Research Focus:development & morphogenesis· 1 Research Focus:dimensionality reduction· 1

Frequent Co-Authors

Jochen R. GuckiD· 3 shared Conrad MöckeliD· 2 shared Kyoohyun KimiD· 2 shared Raimund SchlüßleriD· 2 shared Stephanie MöllmertiD· 2 shared Angela JacobiiD· 1 shared Anja Wehner· 1 shared Asha ParmariD· 1 shared

Activity by Year

2018-2023 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 37 mutual co-author links

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3 shared papersNeuroscience

Jochen R. GuckORCID

Mutual co-authors in cluster

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3 papers

Recent·Most cited

Small leucine-rich proteoglycans inhibit CNS regeneration by modifying the structural and mechanical properties of the lesion environment

Julia Kolb, Vasiliki Tsata, Nora John, Kyoohyun Kim, Conrad Möckel, Gonzalo Rosso, Veronika Kurbel, Asha Parmar, Gargi Sharma, Kristina Karandasheva, Shada Abuhattum, Olga Lyraki, Timon Beck, Paul Friedrich Müller, Raimund Schlüßler, , Daniel Wehner

The paper identifies small leucine-rich proteoglycans (SLRPs) as inhibitors of CNS regeneration by altering the structural and mechanical properties of the injury ECM.

Nature Communications · Oct 26, 2023Peer-reviewedNeuroscience

AIDeveloper: deep learning image classification in life science and beyond

Martin Kräter, Shada Abuhattum, Despina Soteriou, Angela Jacobi, Thomas E Kruger, Jochen R. Guck, Maik Herbig

AIDeveloper is an open-source software for training neural networks in image classification, demonstrated on biological datasets with comparable results to conventional methods.

Advanced Science · Mar 18, 2021Peer-reviewedBioinformatics

Mechanical mapping of spinal cord development and repair in living zebrafish larvae using Brillouin microscopy

Raimund Schlüßler, Stephanie Möllmert, Shada Abuhattum, Gheorghe Cojoc, Paul Müller, Kyoohyun Kim, Conrad Möckel, Conrad Zimmermann, Jürgen Czarske, Jochen Guck

This study uses Brillouin microscopy to map mechanical properties of zebrafish spinal cord during development and repair, showing changes in modulus and viscosity.

bioRxiv · Jan 31, 2018 · PreprintBiophysics