Author

Takeshi K. Matsui

Nara Medical UniversityORCID 0000-0002-1678-284XUnclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 1 Developmental Biology· 1 Neuroscience· 1

Signature Assays, Organisms & Methods

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Organism:human· 3 Approach:statistical model· 3 Research Focus:cell type annotation· 2 Research Focus:differential expression· 2 Assay:scRNA-seq· 2 Assay:bulk RNA-seq· 1 Research Focus:clustering· 1 Approach:machine learning (classical)· 1

Frequent Co-Authors

Eiichiro MoriiD· 3 shared Kazuma SugieiD· 3 shared Yoshihiko M. SakaguchiiD· 3 shared Jay W. ShiniD· 2 shared Joachim Luginbühl· 2 shared Kaoru KinugawaiD· 2 shared Naohiko IguchiiD· 2 shared Naritaka MorikawaiD· 2 shared

Activity by Year

2019-2020 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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3 shared papersBioinformatics

Eiichiro MoriORCID

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3 papers

Recent·Most cited

BioinformaticsbioRxivPreprintSep 2, 2020

Comparative analysis of human brain organoids of brainstem and midbrain at single-cell resolution

Kaoru Kinugawa, Joachim Luginbühl, Takeshi K. Matsui…·Eiichiro Mori

This study compares single-cell transcriptomes of human brainstem and midbrain organoids, identifying unique cell types and similarities with fetal midbrain data.

DOI 10.1101/2020.09.02.279380

humanscRNA-seq

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NeurosciencebioRxivPreprintMar 31, 2020

Oxygen-glucose deprivation and reoxygenation on human cerebral organoids alters expression related to lipid metabolism

Naoki Iwasa, Takeshi K. Matsui, Naritaka Morikawa…·Kazuma Sugie

This study examines the effect of oxygen-glucose deprivation and reoxygenation on human cerebral organoids, identifying 15 downregulated genes and pathways related to lipid metabolism and ischemic injury mechanisms.

1 citation

humanbulk RNA-seq

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Developmental BiologybioRxivPreprintNov 4, 2019

Brainstem organoids from human pluripotent stem cells contain neural crest population

Nobuyuki Eura, Takeshi K. Matsui, Joachim Luginbühl…·Eiichiro Mori

This study develops human brainstem organoids containing neural crest cells and various neuron types, validated by single-cell RNA sequencing, proteomics, and electrophysiology.

2 citations

humanscRNA-seq

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