Author

João Carvalho

University of LisbonORCID 0000-0002-1728-0075Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 1 Evolutionary Biology· 1

Signature Assays, Organisms & Methods

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Assay:whole-genome sequencing· 2 Research Focus:benchmarking· 1 Research Focus:chromatin & epigenetic regulation· 1 Approach:simulation· 1 Approach:statistical model· 1

Frequent Co-Authors

Vítor C. SousaiD· 2 shared Carla Sousa SantosiD· 1 shared Estêvão Faustino· 1 shared Ignacio DoadrioiD· 1 shared Philine G. D. FeulneriD· 1 shared Roger Kenneth ButliniD· 1 shared Rui FariaiD· 1 shared Silvia Perea‍iD· 1 shared

Activity by Year

2023-2025 · peak 1/yr

Co-Author Collaboration Network

9 top collaborators · 24 mutual co-author links

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2 shared papersEvolutionary Biology

Vítor C. SousaORCID

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2 papers

Recent·Most cited

Evolutionary BiologybioRxivPreprintApr 13, 2025

Dating and quantifying past gene flow due to hybridization events in Iberian chubs

Estêvão Faustino, Sofia L. Mendes, João Carvalho…·Vítor C. Sousa

This study dates and quantifies past hybridization events in Iberian chubs using whole genome resequencing data and demographic modeling.

DOI 10.1101/2025.04.13.648569

whole-genome sequencingstatistical model

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BioinformaticsMethods in Ecology and EvolutionPeer-reviewedJul 21, 2023

poolHelper: an R package to help in designing Pool-Seq studies

João Carvalho, Rui Faria, Roger Kenneth Butlin, Vítor C. Sousa

poolHelper simulates Pool-Seq data to optimize study design by evaluating parameter combinations for accurate allele frequency estimation with minimal sequencing effort.

DOI 10.1111/2041-210x.14185

whole-genome sequencingsimulation

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