Jyun‐Yu Jiang

JEDI predicts circular RNA from nucleotide sequences using attention mechanisms and cross-attention layers, outperforming existing methods and enabling backsplicing hotspot discovery.

This paper introduces MuPIPR, a deep learning framework that estimates mutation effects on protein-protein interactions by using contextualized amino acid representations and a Siamese residual recurrent convolutional encoder.

TahcoRoll improves k-mer profiling by efficiently handling variable-length k-mers, outperforming existing tools in time and memory usage without disk space.