Author

Andres Mauricio Cifuentes Bernal

University of South AustraliaORCID 0000-0002-1880-3624Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Assay:bulk RNA-seq· 2 Research Focus:differential expression· 2 Approach:statistical model· 2 Research Focus:gene regulatory network inference· 1 Organism:human· 1 Assay:scRNA-seq· 1

Frequent Co-Authors

Jiuyong LiiD· 2 shared Lin LiuiD· 2 shared Thuc Duy LeiD· 2 shared Vu PhamiD· 1 shared Xiaomei LiiD· 1 shared

Activity by Year

2020-2025 · peak 1/yr

Co-Author Collaboration Network

5 top collaborators · 10 mutual co-author links

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2 shared papersBioinformatics

Jiuyong LiORCID

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2 papers

Recent·Most cited

BioinformaticsRoyal Society Open SciencePeer-reviewedDec 1, 2025

Identifying cooperative genes causing cancer progression with dynamic causal inference

Andres Mauricio Cifuentes Bernal, Lin Liu, Jiuyong Li, Thuc Duy Le

This paper introduces a dynamic causal inference method to identify cooperative cancer driver genes by analyzing gene interactions across cancer progression, showing significant overlap with known drivers and uncovering novel ones.

DOI 10.1098/rsos.250442

humanbulk RNA-seq

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BioinformaticsBioinformaticsPeer-reviewedOct 6, 2020

A Pseudo-Temporal Causality Approach to Identifying miRNA-mRNA Interactions During Biological Processes

Andres Mauricio Cifuentes Bernal, Vu Pham, Xiaomei Li…·Thuc Duy Le

This paper introduces a pseudo-time causality method to identify miRNA-mRNA interactions during biological processes, showing improved performance over existing methods in both single-cell and bulk data.

8 citations

bulk RNA-seqscRNA-seq

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