VSS-Hi-C: Variance-stabilized signals for chromatin contacts
Neda Shokraneh, Faezeh Bayat, Maxwell W. Libbrecht
VSS-Hi-C stabilizes variance in Hi-C data to improve visualization and analysis by transforming read counts into unit variance signals.
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Simon Fraser UniversityORCID 0000-0002-2278-5895Unclaimed ORCID profile · follow to get notified of new preprints
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Neda Shokraneh, Faezeh Bayat, Maxwell W. Libbrecht
VSS-Hi-C stabilizes variance in Hi-C data to improve visualization and analysis by transforming read counts into unit variance signals.
Faezeh Bayat, Maxwell W. Libbrecht
The paper introduces VSS, a method to stabilize variance in sequencing-based genomic signals, improving downstream applications like SAGA.
This paper identifies cancer subnetwork markers using a multi-objective approach combining differential gene expression and network topology, achieving better classification performance than existing methods.