Author

Gideon Simpson

Drexel UniversityORCID 0000-0002-2300-6806Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Assay:metagenomics· 2 Approach:statistical model· 2 Research Focus:benchmarking· 1 Research Focus:clustering· 1 Approach:deep learning· 1

Frequent Co-Authors

GAIL L. ROSENiD· 2 shared Joshua Chang MelliD· 2 shared Michael P O’ConnoriD· 2 shared Stephen WoloszynekiD· 2 shared Zhengqiao ZhaoiD· 2 shared

Activity by Year

2017-2019 · peak 1/yr

Co-Author Collaboration Network

5 top collaborators · 10 mutual co-author links

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2 shared papersBioinformatics

GAIL L. ROSENORCID

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2 papers

Recent·Most cited

BioinformaticsPLoS ONEPeer-reviewedDec 11, 2019

Themetagenomics: Exploring Thematic Structure and Predicted Functionality of 16s rRNA Amplicon Data

Stephen Woloszynek, Joshua Chang Mell, Zhengqiao Zhao…·GAIL L. ROSEN

The paper introduces a topic modeling approach to analyze 16S rRNA amplicon data, linking microbial co-occurrence patterns to functional and environmental features.

32 citations

metagenomicsdeep learning

𝕏 PostBluesky

BioinformaticsbioRxivPreprintAug 15, 2017

Evaluating a topic model approach for parsing microbiome data structure

Stephen Woloszynek, Zhengqiao Zhao, Gideon Simpson…·GAIL L. ROSEN

This paper evaluates a topic model approach for analyzing microbiome data, showing it captures dynamic behavior and identifies gut configurations in time-series data.

2 citations

metagenomicsstatistical model

𝕏 PostBluesky