Alison Ziesel

Stable, intronic RNAs explain preservation of introns in Cyanidioschyzon merolae

The paper identifies stable intronic RNAs (sieRNAs) in Cyanidioschizoon merolae that explain the preservation of introns by encoding functional non-coding RNAs involved in stress response and gene regulation.

Structural impact of synonymous mutations in six SARS-CoV-2 Variants of Concern

The paper analyzes synonymous mutations in six SARS-CoV-2 Variants of Concern to assess their impact on RNA secondary structure and stability, finding minimal effects.

Markers, Mechanisms and Metrics of Biological Aging: A Scoping Review

This review analyzes 435 biological aging papers to show trends in molecular markers and new metrics, and identifies consistent and conflicting findings.

Prediction of RNA secondary structures in SARS-CoV-2 and comparison with contemporary predictions

The paper predicts RNA secondary structures in SARS-CoV-2 and compares them with existing predictions, finding limited agreement on precise structures but general agreement on structural regions.

Supervised Promoter Recognition: A Benchmark Framework

The paper introduces a benchmark framework for evaluating deep learning models in promoter recognition and finds that current models lack sufficient precision on eukaryotic genomic sequences.