Author

Amine Abbadi

Norddeutsche Pflanzenzucht Hans-Georg Lembke (Germany)ORCID 0000-0002-2389-978XUnclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 1 Genomics· 1 Plant Biology· 1

Signature Assays, Organisms & Methods

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Organism:Arabidopsis· 3 Research Focus:gene regulatory network inference· 2 Assay:whole-genome sequencing· 2 Assay:bulk RNA-seq· 1 Assay:ChIP-seq· 1 Research Focus:database / resource· 1 Research Focus:differential expression· 1 Assay:DNA methylation· 1

Frequent Co-Authors

Agnieszka A. GolicziD· 2 shared Gözde YildiziD· 2 shared Rod John SnowdoniD· 2 shared Silvia F. ZaniniiD· 2 shared Tobias Kox· 2 shared Avneesh KumariD· 1 shared Christian JungiD· 1 shared Christian ObermeieriD· 1 shared

Activity by Year

2022-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 20 mutual co-author links

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2 shared papersBioinformatics

Agnieszka A. GoliczORCID

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Author profile →

3 papers

Recent·Most cited

Machine learning and multi-omic analysis reveal contrasting recombination landscape of A and C subgenomes of winter oilseed rape

Jose A. Montero-Tena, Silvia F. Zanini, Gözde Yildiz, Tobias Kox, Amine Abbadi, Rod John Snowdon, Agnieszka A. Golicz

The paper uses machine learning and multi-omic data to analyze recombination patterns in the A and C subgenomes of Brassica napus, finding distinct landscape features between them.

The Plant Genome · Mar 1, 2026Peer-reviewedBioinformatics

Graphical pangenomics-enabled characterisation of structural variant impact on gene expression in Brassica napus

Gözde Yildiz, Silvia F. Zanini, Sven Ernst Weber, Venkataramana Kopalli, Tobias Kox, Amine Abbadi, Rod John Snowdon, Agnieszka A. Golicz

This study uses pangenome graphs to analyze structural variants in Brassica napus, showing they impact gene expression and eQTL analysis better than single references.

Theoretical and Applied Genetics · Apr 1, 2025Peer-reviewedPlant Biology

Direct access to millions of mutations by Whole Genome Sequencing of an oilseed rape mutant population

Srijan Jhingan, Avneesh Kumar, Hans‐Joachim Harloff, Felix Dreyer, Amine Abbadi, Katrin Beckmann, Christian Obermeier, Christian Jung

The paper sequenced whole genomes of an oilseed rape mutant population to catalog mutations induced by EMS mutagenesis and provides an online tool for mutation identification.

The Plant Journal · Dec 28, 2022Peer-reviewedGenomics