Author

Marie Van Hecke

Ghent UniversityORCID 0000-0002-2397-8269Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Organism:bacteria (other)· 1 Research Focus:benchmarking· 1 Approach:contrastive learning· 1 Research Focus:database / resource· 1 Research Focus:deconvolution· 1 Assay:metagenomics· 1 Approach:statistical model· 1 Research Focus:variant calling· 1

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Aranka SteyaertiD· 1 shared Jan FostieriD· 1 shared Kathleen Marchal DiD· 1 shared

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2026-2026 · peak 1/yr

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1 shared paperBioinformatics

Aranka SteyaertORCID

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1 paper

Recent·Most cited

BioinformaticsbioRxivPreprintMay 12, 2026

A Conditional Random Field approach for de novo reconstruction of bacterial haplotypes from a de Bruijn graph representation

Aranka Steyaert, Marie Van Hecke, Kathleen Marchal D, Jan Fostier

This paper introduces HaploDetox, a method for de novo bacterial haplotype reconstruction using a Conditional Random Field approach on de Bruijn graphs, achieving improved SNP phasing accuracy.

DOI 10.64898/2026.05.11.724222

bacteria (other)metagenomics

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