NicheScope: Identifying Multicellular Niches and Niche-Regulated Cell States in Spatial Transcriptomics
Xinyi Yu, Xiaomeng Wan, Leqi Tian, Yuheng Chen, Yuyao Liu, Tianwei Yu, Can Yang, Jiashun Xiao
NicheScope identifies multicellular niches and their regulated cell states from spatial transcriptomics data, revealing tissue structures and clinically relevant tumor niches.
bioRxiv · Aug 21, 2025 · PreprintBioinformatics