Author

Brandie D. Wagner

Colorado School of Public HealthORCID 0000-0002-2745-0103Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 1 Immunology· 1

Signature Assays, Organisms & Methods

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Research Focus:differential expression· 2 Organism:human· 2 Approach:statistical model· 2 Assay:bulk RNA-seq· 1 Research Focus:cell-cell communication· 1 Research Focus:clustering· 1 Research Focus:gene regulatory network inference· 1 Assay:metagenomics· 1

Frequent Co-Authors

Alexander M. KaizeriD· 1 shared Aline B. MadduxiD· 1 shared Anil SapruiD· 1 shared Athena F. ZuppaiD· 1 shared Charles LangelieriD· 1 shared Christina M OsborneiD· 1 shared Daniel A. NottermaniD· 1 shared Emily LydoniD· 1 shared

Activity by Year

2024-2025 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 36 mutual co-author links

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1 shared paperBioinformatics

Alexander M. KaizerORCID

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2 papers

Recent·Most cited

Integrative Multi-Omics Analysis of Melanoma: Uncovering Pathways Associated with Immunotherapy Outcomes

Morgan L. MacBeth, Alexander M. Kaizer, Brandie D. Wagner, Kasey L. Couts

This study uses multi-omics factor analysis to identify molecular pathways linked to immunotherapy outcomes in melanoma, revealing associations between tumor transcriptomes, microbiomes, and clinical responses.

bioRxiv · Apr 1, 2025 · PreprintBioinformatics

Proteomic profiling of the local and systemic immune response to pediatric respiratory viral infections

Emily Lydon, Christina M Osborne, Brandie D. Wagner, Lilliam Ambroggio, Jonathan Kirk Harris, Ron Reeder, Todd C. Carpenter, Aline B. Maddux, Matthew K. Leroue, Nadir Yehya, Joseph L. DeRisi, Mark W. Hall, Athena F. Zuppa, Joseph A. Carcillo, Kathleen L. Meert, , Peter M. Mourani

This study uses proteomics to analyze immune responses in tracheal aspirate and plasma from critically ill children with viral lower respiratory tract infections, identifying diagnostic biomarkers and correlations with viral load and coinfections.

mSystems · Nov 29, 2024Peer-reviewedImmunology