Author
Columbia UniversityORCID 0000-0002-2951-4385Unclaimed ORCID profile · follow to get notified of new preprints
4 papers
Recent·Most cited
Philippe Chlenski, Deirdre Ricaurte, Itsik Pe’er
The paper investigates coverage irregularities in 16S amplicon data to infer microbial growth dynamics, finding no correlation with WGS-based methods.
Tyler Joseph, Philippe Chlenski, Aviya Litman…·Itsik Pe’er
The paper introduces CoPTR, a tool for computing peak-to-trough ratios from metagenomic data, showing it is more accurate and provides more estimates than existing methods, and demonstrates its application in a case-control study of irritable bowel disease.
Philippe Chlenski, Melody Hsu, Itsik Pe’er
MiSDEED generates synthetic longitudinal multi-omics data for microbiome studies to aid in power analysis and design.
Bruce Parrello, Rory Butler, Philippe Chlenski…·Ross Overbeek
The paper introduces a new metagenomic binning service in PATRIC that assigns contigs to reference genomes using marker proteins and provides annotated draft genomes.