Author

Marjan Farahbod

Simon Fraser UniversityORCID 0000-0002-3022-6735Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Genomics· 2 Bioinformatics· 1

Signature Assays, Organisms & Methods

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Approach:statistical model· 3 Assay:ChIP-seq· 2 Research Focus:gene regulatory network inference· 2 Organism:human· 2 Research Focus:benchmarking· 1 Assay:bulk RNA-seq· 1 Research Focus:differential expression· 1

Frequent Co-Authors

Maxwell W. LibbrechtiD· 2 shared Mehdi Foroozandeh ShahrakiiD· 2 shared Abdul Rahman DiabiD· 1 shared Benjamin C. HitziD· 1 shared Habib DaneshpajouhiD· 1 shared Ian WhalingiD· 1 shared Ishan Goel· 1 shared J. Michael CherryiD· 1 shared

Activity by Year

2020-2024 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 36 mutual co-author links

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2 shared papersGenomics

Maxwell W. LibbrechtORCID

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3 papers

Recent·Most cited

Robust chromatin state annotation

Mehdi Foroozandeh Shahraki, Marjan Farahbod, Maxwell W. Libbrecht

The paper evaluates the reproducibility of SAGA chromatin state annotations and introduces SAGAconf to assign confidence scores to these annotations.

Genome Research · Mar 21, 2024Peer-reviewedGenomics

Integrative chromatin state annotation of 234 human ENCODE4 cell types using Segway reveals disease drivers

Marjan Farahbod, Abdul Rahman Diab, Paul Sud, Meenakshi S. Kagda, Ian Whaling, Mehdi Foroozandeh Shahraki, Ishan Goel, Habib Daneshpajouh, Benjamin C. Hitz, J. Michael Cherry, Maxwell W. Libbrecht

The paper presents ENCODE4 Segway annotations for 234 human cell types, improving sensitivity in capturing regulatory patterns relevant to disease and traits.

bioRxiv · Oct 26, 2023 · PreprintGenomics

Untangling the effects of cellular composition on coexpression analysis

Marjan Farahbod, Paul Pavlidis

The paper examines how cellular composition affects coexpression analysis in human brain RNA data, finding that much of the observed coexpression is due to cell-type composition rather than regulatory relationships.

Genome Research · Jun 1, 2020Peer-reviewedBioinformatics