Author

Johannes Breidenbach

Norwegian Institute of Bioeconomy ResearchORCID 0000-0002-3137-7236Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 1 Molecular Biology· 1

Signature Assays, Organisms & Methods

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Research Focus:benchmarking· 2 Assay:bulk RNA-seq· 2 Organism:human· 2 Approach:statistical model· 2 Approach:benchmark study· 1

Frequent Co-Authors

Arvind Y. M. SundaramiD· 2 shared Benedicte Alexandra LieiD· 2 shared Fatima HeinickeiD· 2 shared Gregor D. GilfillaniD· 2 shared Magnus LeithaugiD· 2 shared Manuela ZucknickiD· 2 shared Marianne DallandiD· 2 shared Simon RayneriD· 2 shared

Activity by Year

2019-2020 · peak 1/yr

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10 top collaborators · 45 mutual co-author links

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2 shared papersMolecular Biology

Arvind Y. M. SundaramORCID

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2 papers

Recent·Most cited

An extension to: Systematic assessment of commercially available low-input miRNA library preparation kits

Fatima Heinicke, Xiangfu Zhong, Manuela Zucknick, Johannes Breidenbach, Arvind Y. M. Sundaram, Siri T. Flåm, Magnus Leithaug, Marianne Dalland, Simon Rayner, Benedicte Alexandra Lie, Gregor D. Gilfillan

The paper evaluates two additional miRNA library preparation kits, confirming that miRNA abundance biases are kit-specific and affect dataset comparability.

RNA Biology · May 21, 2020Peer-reviewedMolecular Biology

Systematic assessment of commercially available low-input miRNA library preparation kits

Fatima Heinicke, Xiangfu Zhong, Manuela Zucknick, Johannes Breidenbach, Arvind Y. M. Sundaram, Siri T. Flåm, Magnus Leithaug, Marianne Dalland, Andrew A. Farmer, Jordana M. Henderson, Melanie Hussong, Pamela Renate Moll, Loan Nguyen, Amanda M. McNulty, Jonathan M. Shaffer, , Gregor D. Gilfillan

This study evaluates six commercial low-input miRNA library prep kits, finding differences in detection sensitivity and differential expression but no kit fully captures all expected miRNAs.

RNA Biology · Sep 27, 2019Peer-reviewedBioinformatics