Author

Ryota Gomi

Kyoto UniversityORCID 0000-0002-3299-333XUnclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Assay:whole-genome sequencing· 2 Organism:bacteria (other)· 1 Approach:biophysical modeling· 1 Research Focus:chromatin & epigenetic regulation· 1 Approach:comparative / phylogenetic analysis· 1 Organism:E. coli· 1 Approach:experimental assay· 1 Research Focus:gene regulatory network inference· 1

Frequent Co-Authors

Eiji HaramotoiD· 1 shared Fumie Adachi· 1 shared Hirokazu YanoiD· 1 shared Hiroyuki KatayamaiD· 1 shared Kumiko OgumaiD· 1 shared Masaaki KitajimaiD· 1 shared S. TORIIiD· 1 shared

Activity by Year

2025-2026 · peak 2/yr

Co-Author Collaboration Network

7 top collaborators · 10 mutual co-author links

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1 shared paperMicrobiology

Eiji HaramotoORCID

Mutual co-authors in cluster

Author profile →

3 papers

Recent·Most cited

Tn3-derived inverted-repeat miniature elements (TIMEs) that mobilize antibiotic resistance genes

Ryota Gomi, Hirokazu Yano

This study identifies new TIME-COMP-like structures containing antibiotic resistance genes in Enterobacteriaceae genomes, highlighting the role of TIMEs in ARG mobilization.

Microbial Genomics · Jul 14, 2026Peer-reviewedMicrobiology

Simultaneous detection of protozoa, bacteria, and viruses from environmental water through membrane-adsorption followed by direct nucleic acid extraction

S. TORII, Masaaki Kitajima, Eiji Haramoto, Ryota Gomi, Kumiko Oguma, Hiroyuki Katayama

This paper develops a method for detecting protozoa, bacteria, and viruses in water using membrane adsorption and direct nucleic acid extraction, showing improved sensitivity for several pathogens.

Water Research · Mar 21, 2026Peer-reviewedMicrobiology

Quinolone resistance genes qnr, aac(6')-Ib-cr, oqxAB, and qepA in environmental Escherichia coli: insights into their genetic contexts from comparative genomics

Ryota Gomi, Fumie Adachi

This study analyzes the genetic contexts of quinolone resistance genes in environmental E. coli using comparative genomics to identify mobile genetic elements and their chromosomal and plasmid locations.

Microbial Ecology · Feb 17, 2025Peer-reviewedMicrobiology