Author

Fred C. Boogerd

Vrije Universiteit AmsterdamORCID 0000-0002-3329-7459Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Approach:statistical model· 2 Organism:E. coli· 1 Approach:optimal transport· 1 Approach:simulation· 1 Research Focus:software / tool· 1

Frequent Co-Authors

Hiroyuki KurataiD· 2 shared Kazuhiro MaedaiD· 2 shared Arnaud JavelleiD· 1 shared Hans Victor WesterhoffiD· 1 shared

Activity by Year

2021-2026 · peak 1/yr

Co-Author Collaboration Network

4 top collaborators · 6 mutual co-author links

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2 shared papersSystems Biology

Hiroyuki KurataORCID

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2 papers

Recent·Most cited

Computer experimentation on E. coli ammonium transport and assimilation reveals mechanisms for energy coupling, balanced futile cycling, and robust growth

Kazuhiro Maeda, Hiroyuki Kurata, Arnaud Javelle, Hans Victor Westerhoff, Fred C. Boogerd

The paper compares kinetic models of E. coli ammonium transport and assimilation to determine the mechanism of energy coupling and growth robustness under varying conditions.

bioRxiv · May 13, 2026 · PreprintSystems Biology

RCGAToolbox: A real-coded genetic algorithm software for parameter estimation of kinetic models

Kazuhiro Maeda, Fred C. Boogerd, Hiroyuki Kurata

RCGAToolbox provides real-coded genetic algorithms for parameter estimation in kinetic models, offering two algorithms and a user-friendly interface.

IPSJ Transactions on Bioinformatics · Jan 1, 2021Peer-reviewedSystems Biology