Author

Hao Zhu

Tufts UniversityORCID 0000-0002-3386-6076Unclaimed ORCID profile · follow to get notified of new preprints

Additional preprints under this name without ORCID

Hao Zhu8 papers · Chinese University of Hong Kong

Biology Disciplines

Click to filter author papers

Bioinformatics· 3

Signature Assays, Organisms & Methods

Click to filter · or open tag

Research Focus:gene regulatory network inference· 3 Assay:scRNA-seq· 3 Approach:deep learning· 2 Approach:diffusion model· 1 Organism:human· 1 Organism:mouse· 1 Approach:statistical model· 1 Approach:variational autoencoder· 1

Frequent Co-Authors

Donna K. SlonimiD· 3 shared Gonzalo CardenaliD· 1 shared Jonathan S. GootenbergiD· 1 shared Omar O. AbudayyehiD· 1 shared Xuting JiniD· 1 shared

Activity by Year

2024-2026 · peak 1/yr

Co-Author Collaboration Network

5 top collaborators · 10 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

3 shared papersBioinformatics

Donna K. SlonimORCID

Mutual co-authors in cluster

Author profile →

3 papers

Recent·Most cited

flashscenic: Accelerated GRN Analysis with RegDiffusion for Large-Scale Single-Cell Data

Hao Zhu, Gonzalo Cardenal, Xuting Jin, Jonathan S. Gootenberg, Omar O. Abudayyeh, Donna K. Slonim

flashscenic accelerates single-cell GRN analysis using GPU acceleration, improving speed and enabling benchmarking of integration strategies in AML data.

bioRxiv · Oct 30, 2026 · PreprintBioinformatics

Improved gene regulatory network inference from single cell data with dropout augmentation

Hao Zhu, Donna K. Slonim

This paper introduces Dropout Augmentation and DAZZLE, a GRN inference method that improves performance by addressing dropout in single-cell data through model regularization.

PLoS Computational Biology · Oct 24, 2025Peer-reviewedBioinformatics

From Noise to Knowledge: Diffusion Probabilistic Model-Based Neural Inference of Gene Regulatory Networks

Hao Zhu, Donna K. Slonim

This paper introduces RegDiffusion, a diffusion model for gene regulatory network inference, showing superior performance on single-cell datasets.

Journal of Computational Biology · Oct 10, 2024Peer-reviewedBioinformatics