Author

Gabriella Casalena

Memorial Sloan Kettering Cancer CenterORCID 0000-0002-3425-7336Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 1 Cancer Biology· 1 Neuroscience· 1

Signature Assays, Organisms & Methods

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Approach:statistical model· 3 Assay:bulk RNA-seq· 2 Organism:human· 2 Assay:proteomics· 2 Research Focus:cell type annotation· 1 Approach:deep learning· 1 Research Focus:differential expression· 1 Assay:long-read sequencing· 1

Frequent Co-Authors

Alex KentsisiD· 2 shared Andrew McPhersoniD· 2 shared Katarzyna KulejiD· 2 shared Asher Preska SteinbergiD· 1 shared Eliyahu Havasov· 1 shared Giovanni ManfrediiD· 1 shared Jasmine A. Fels· 1 shared Jinxin ZhangiD· 1 shared

Activity by Year

2020-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 23 mutual co-author links

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2 shared papersCancer Biology

Alex KentsisORCID

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Author profile →

3 papers

Recent·Most cited

Cancer BiologybioRxivPreprintAug 28, 2026

Recurrent non-canonical proteoforms in acute myeloid leukemia identified by integrative proteogenomics

Laura Katharina Schmalbrock, Alex Kentsis, Katarzyna Kulej…·Andrew McPherson

The paper identifies recurrent non-canonical proteoforms in AML using integrative proteogenomics, revealing 5,849 unannotated proteoforms, including 1,987 with no homology to annotated proteins.

DOI 10.64898/2026.08.27.747547

humanproteomics

BioinformaticsbioRxivPreprintAug 23, 2025

End-to-end proteogenomics for discovery of cryptic and non-canonical cancer proteoforms using long-read transcriptomics and multi-dimensional proteomics

Katarzyna Kulej, Asher Preska Steinberg, Jinxin Zhang…·Alex Kentsis

The paper introduces ProteomeGenerator3, an end-to-end proteogenomics method that detects non-canonical proteoforms in cancer using long-read transcriptomics and multi-dimensional proteomics.

1 citation

humanlong-read sequencing

NeuroscienceEndocrinology Diabetes & MetabolismPeer-reviewedOct 9, 2020

Sex and estrogen receptor β have modest effects on gene expression in the mouse brain posterior cortex

Jasmine A. Fels, Gabriella Casalena, Giovanni Manfredi

This study examines sex differences and the role of ERβ in gene expression in the mouse posterior cortex, finding few sex-specific genes and suggesting post-transcriptional effects of ERβ.

6 citations

mousebulk RNA-seq