Author

Jean‐François Pombert

Illinois Institute of TechnologyORCID 0000-0002-3449-8375Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 2 Genomics· 1

Signature Assays, Organisms & Methods

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Approach:experimental assay· 3 Research Focus:cell-cell communication· 1 Research Focus:genome assembly· 1 Assay:proteomics· 1 Assay:whole-genome sequencing· 1

Frequent Co-Authors

Alexander Thomas JulianiD· 2 shared Alyssa Britney BarnesiD· 1 shared Dieter EbertiD· 1 shared Jialing XiangiD· 1 shared Pascal AngstiD· 1 shared Peter D. FieldsiD· 1 shared

Activity by Year

2023-2026 · peak 1/yr

Co-Author Collaboration Network

6 top collaborators · 6 mutual co-author links

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2 shared papersBioinformatics

Alexander Thomas JulianORCID

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3 papers

Recent·Most cited

SecretTarget: A pipeline for identifying host-interacting effector candidates through secondary localization features

Alexander Thomas Julian, Alyssa Britney Barnes, Jean‐François Pombert, Jialing Xiang

SecretTarget identifies host-interacting effector candidates using secondary localization features, revealing a novel host ER-parasite interaction critical for parasite survival.

bioRxiv · Aug 18, 2026 · PreprintBioinformatics

SYNY: a pipeline to investigate and visualize collinearity between genomes

Alexander Thomas Julian, Jean‐François Pombert

SYNY is a pipeline that identifies and visualizes collinearity between genomes using sequence alignments and gene order, providing tools for comparative genomics analysis.

bioRxiv · May 9, 2024 · PreprintBioinformatics

Near chromosome-level genome assembly of the microsporidium Hamiltosporidium tvaerminnensis

Pascal Angst, Jean‐François Pombert, Dieter Ebert, Peter D. Fields

This paper presents a near-chromosomal genome assembly of Hamiltosporidium tvaerminnensis and provides high-quality gene annotations using Iso-Seq, revealing alternative polyadenylation and splicing variation.

G3 Genes Genomes Genetics · Aug 11, 2023Peer-reviewedGenomics