Evolutionary BiologyBMC BioinformaticsPeer-reviewed
Single-character insertion-deletion model preserves long indels in ancestral sequence reconstruction
Gholamhossein Jowkar, Jūlija Pečerska, Manuel Gil, Maria O. Anisimova
The paper evaluates ARPIP's ability to reconstruct ancestral sequences with long indels, showing it preserves gap length distributions and captures deletion bias in mammalian proteins.