Author

Kengo Takahashi

Max Planck Institute for Biological CyberneticsORCID 0000-0002-3532-1512Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Neuroscience· 6

Signature Assays, Organisms & Methods

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Assay:imaging· 4 Approach:experimental assay· 3 Organism:mouse· 3 Research Focus:spatial domain detection· 3 Approach:statistical model· 3 Research Focus:cell type annotation· 2 Research Focus:clustering· 2 Organism:rat· 2

Frequent Co-Authors

Filip SobczakiD· 3 shared Xin YuiD· 3 shared Cyriel M. A. PennartziD· 2 shared Gerjan Huis in ’t VeldiD· 2 shared Jun-Ying WangiD· 2 shared Patricia Pais‐RoldániD· 2 shared Sangcheon ChoiiD· 2 shared Umberto OlceseiD· 2 shared

Activity by Year

2021-2026 · peak 3/yr

Co-Author Collaboration Network

10 top collaborators · 16 mutual co-author links

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3 shared papersNeuroscience

Filip SobczakORCID

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6 papers

Recent·Most cited

Behavioral arousal organizes visual cortical population micro-states across the sleep-wake cycle

Jun-Ying Wang, Gerjan Huis in ’t Veld, Kengo Takahashi, Kes Tijsseling, Mathis Bassler, Andreas Knoben, Cyriel M. A. Pennartz, Umberto Olcese

The paper shows that visual cortical population micro-states are organized by behavioral arousal rather than discrete sleep-wake states in mice.

bioRxiv · Oct 5, 2026 · PreprintNeuroscience

A polymeric, PDMS-based large-scale skull replacement suitable for optical and mechanical access for long-term neuronal imaging, electrophysiology, and optogenetics

Kengo Takahashi, Gerjan Huis in ’t Veld, Davide Benedetti, Jun-Ying Wang, Samuel Pontes Quero, Rafael Yuste, Cyriel M. A. Pennartz, Umberto Olcese

bioRxiv · Apr 15, 2025 · PreprintNeuroscience

StandardRat: A multi-center consensus protocol to enhance functional connectivity specificity in the rat brain

Joanes Grandjean, Gabriel Desrosiers-Grégoire, Cynthia Anckaerts, Diego Ángeles-Valdéz, Fadi Ayad, David André Barrière, Ines Blockx, Aleksandra B Bortel, Margaret Broadwater, Beatriz M Cardoso, Marina Célestine, Jorge E. Chavez-Negrete, Sangcheon Choi, Emma Christiaen, Perrin G Clavijo, , Kajo van der Marel

StandardRat improves functional connectivity specificity in rat brains through a standardized MRI protocol tested across 20 centers.

bioRxiv · Apr 27, 2022 · PreprintNeuroscience

Focal fMRI signal enhancement with implantable inductively coupled detectors

Yi Chen, Qi Wang, Sangcheon Choi, Hang Zeng, Kengo Takahashi, Chunqi Qian, Xin Yu

This paper develops an implantable inductive coil detector to enhance focal fMRI signal sensitivity in animal brain imaging, achieving a 2-3 fold increase in tSNR compared to conventional methods.

NeuroImage · Dec 8, 2021Peer-reviewedNeuroscience

Characterizing brain state-dependent pupil dynamics based on lateral hypothalamic activity

Kengo Takahashi, Filip Sobczak, Patricia Pais‐Roldán, Xin Yu

The paper investigates the relationship between lateral hypothalamic activity and pupil dynamics across different brain states, finding that LH activity modulates the correlation between pupil dynamics and ACC signals.

bioRxiv · Sep 22, 2021 · PreprintNeuroscience

Decoding the brain state-dependent relationship between pupil dynamics and resting state fMRI signal fluctuation

Filip Sobczak, Patricia Pais‐Roldán, Kengo Takahashi, Xin Yu

The paper identifies trial-specific brain state patterns linked to pupil dynamics in anesthetized rats using PCA and decoding methods.

eLife · Aug 31, 2021Peer-reviewedNeuroscience