Author

Chiara Caraccio

Stanford MedicineORCID 0000-0002-3580-1348Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioengineering· 1 Genomics· 1

Signature Assays, Organisms & Methods

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Research Focus:cell type annotation· 2 Approach:experimental assay· 2 Organism:human· 2 Assay:ATAC-seq· 1 Assay:bulk RNA-seq· 1 Research Focus:cell-cell communication· 1 Research Focus:differential expression· 1 Research Focus:gene regulatory network inference· 1

Frequent Co-Authors

Garry P. NolaniD· 2 shared John W. HickeyiD· 2 shared Aaron M. HorningiD· 1 shared Almudena Espín-PéreziD· 1 shared Annika K K WeimeriD· 1 shared Bonnie Dighero-Kemp· 1 shared Christian M. SchürchiD· 1 shared Daniel J. CotteriD· 1 shared

Activity by Year

2021-2025 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 33 mutual co-author links

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2 shared papersBioengineering

Garry P. NolanORCID

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Author profile →

2 papers

Recent·Most cited

Fluid-Squid: DIY Multiplexed Imaging of Cells and Tissues

John W. Hickey, Hongquan Li, Chiara Caraccio, You Yan, Kevin Marx, Peter Martin, Hope T. Leng, John Fayiah, Elvis Towalid, Bonnie Dighero-Kemp, Garry P. Nolan, Manu Prakash, David R. McIlwain

Fluid-Squid enables customizable, cost-effective multiplexed imaging of cells and tissues through automated fluidics and barcoding strategies.

bioRxiv · Oct 9, 2025 · PreprintBioengineering

High Resolution Single Cell Maps Reveals Distinct Cell Organization and Function Across Different Regions of the Human Intestine

John W. Hickey, Winston R. Becker, Stephanie A. Nevins, Aaron M. Horning, Almudena Espín-Pérez, Roxanne Chiu, Derek C. Chen, Daniel J. Cotter, Edward D. Esplin, Annika K K Weimer, Chiara Caraccio, Vishal Gautham Venkataraaman, Christian M. Schürch, Sarah Black, Maria Brbić, , Michael P. Snyder

The paper maps cell organization and function across human intestine regions using single nuclear RNA and open chromatin assays, revealing distinct cell neighborhoods and regulatory differences.

bioRxiv · Nov 25, 2021 · PreprintGenomics