Author

Shadma Fatima

UNSW SydneyORCID 0000-0002-3583-1301Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 1 Genetic & Genomic Medicine· 1

Signature Assays, Organisms & Methods

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Assay:bulk RNA-seq· 2 Research Focus:differential expression· 2 Approach:statistical model· 2 Approach:benchmark study· 1 Research Focus:benchmarking· 1 Research Focus:gene regulatory network inference· 1 Organism:human· 1

Frequent Co-Authors

Fatemeh VafaeeiD· 2 shared Abhishek VijayaniD· 1 shared Abir Khazaal· 1 shared Andrei SmolnikoviD· 1 shared Arcot SowmyaiD· 1 shared Seid Miad ZandaviiD· 1 shared

Activity by Year

2022-2022 · peak 2/yr

Co-Author Collaboration Network

6 top collaborators · 9 mutual co-author links

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2 shared papersBioinformatics

Fatemeh VafaeeORCID

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2 papers

Recent·Most cited

Blood-based transcriptomic signature panel identification for cancer diagnosis: Benchmarking of feature extraction methods

Abhishek Vijayan, Shadma Fatima, Arcot Sowmya, Fatemeh Vafaee

This study benchmarks eleven feature extraction methods for identifying blood-based transcriptomic biomarkers in cancer diagnosis, finding PLS-DA superior for classification and Ranger for robust feature selection.

Briefings in Bioinformatics · Aug 9, 2022Peer-reviewedBioinformatics

Pan-cancer Analyses reveal functional similarities of three lncRNAs across multiple tumors

Abir Khazaal, Seid Miad Zandavi, Andrei Smolnikov, Shadma Fatima, Fatemeh Vafaee

This study identifies three lncRNAs consistently dysregulated across eight cancer types and shows they are involved in similar biological processes related to cancer progression.

medRxiv · Mar 14, 2022 · PreprintGenetic & Genomic Medicine