Author

Khalid Raza

Jamia Millia IslamiaORCID 0000-0002-3646-6828Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Approach:statistical model· 5 Assay:bulk RNA-seq· 3 Research Focus:differential expression· 3 Organism:human· 2 Approach:machine learning (classical)· 2 Research Focus:benchmarking· 1 Assay:ChIP-seq· 1 Research Focus:clustering· 1

Frequent Co-Authors

Almas JabeeniD· 2 shared Nadeem Ahmad· 2 shared Nisar Wani· 2 shared Alaa A. A. AljabaliiD· 1 shared Aristóteles Goés‐NetoiD· 1 shared Bruno Silva AndradeiD· 1 shared Cecília Horta Ramalho PintoiD· 1 shared Debmalya BarhiD· 1 shared

Activity by Year

2017-2022 · peak 3/yr

Co-Author Collaboration Network

10 top collaborators · 22 mutual co-author links

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Curved chords = mutual co-authorship

2 shared papersBioinformatics

Almas JabeenORCID

Mutual co-authors in cluster

Author profile →

7 papers

Recent·Most cited

BioinformaticsInflammationPeer-reviewedOct 10, 2022

SARS-CoV-2 variants show a gradual declining pathogenicity and pro-inflammatory cytokine spur, an increasing antigenic and anti-inflammatory cytokine induction, and rising structural protein instability

Debmalya Barh, Sandeep Tiwari, Lucas Gabriel Rodrigues Gomes…·Murtaza M. Tambuwala

The paper analyzes SARS-CoV-2 variants to show decreasing pathogenicity and pro-inflammatory cytokines, increasing antigenicity and anti-inflammatory cytokines, and rising structural protein instability across variants.

50 citationstop 3%

humanwhole-genome sequencing

𝕏 PostBluesky

BioinformaticsbioRxivPreprintDec 17, 2018

Differential Expression Analysis of ZIKV Infected Human RNA Sequence Reveals Potential Biomarkers

Almas Jabeen, Nadeem Ahmad, Khalid Raza

The paper identifies differentially expressed genes in ZIKV-infected human RNA-seq data and reports significant DEGs potentially involved in altered biological processes.

5 citations

humanbulk RNA-seq

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Systems BiologyBiosystemsPeer-reviewedNov 24, 2018

Mathematical Model For Plant-Insect Interaction With Dynamic Response To PAD4-BIK1 Interaction And Effect Of BIK1 Inhibition

Sanjay Kumar, Sabahuddin Ahmad, Mohammad Imran Siddiqi, Khalid Raza

The paper develops a mathematical model to study plant-insect interactions, focusing on the role of BIK-1 inhibition in enhancing plant immunity and biomass production.

8 citations

plant (other)statistical model

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Systems BiologyAdvances in intelligent systems and computingPeer-reviewedSep 18, 2018

Raw sequence to target gene prediction: An integrated inference pipeline for ChIP-seq and RNA-seq datasets

Nisar Wani, Khalid Raza

The paper introduces an integrated pipeline to predict target genes and their regulation by transcription factors using ChIP-seq and RNA-seq data.

9 citations

ChIP-seqbulk RNA-seq

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BioinformaticsLecture notes in computational vision and biomechanicsPeer-reviewedNov 13, 2017

Machine Learning-Based State-Of-The-Art Methods For The Classification Of RNA-Seq Data

Almas Jabeen, Nadeem Ahmad, Khalid Raza

This paper discusses machine learning approaches for RNA-Seq data classification and their implementation to improve disease diagnosis and biomarker research.

59 citationstop 3%

bulk RNA-seqmachine learning (classical)

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BioinformaticsbioRxivPreprintMar 29, 2017

Multiple Kernel Learning Approach For Medical Image Analysis

Nisar Wani, Khalid Raza

The paper applies multiple kernel learning algorithms to analyze high-dimensional and heterogeneous medical image data for diagnostic purposes.

2 citations

imagingmachine learning (classical)

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BioinformaticsCommunications in computer and information sciencePeer-reviewedJan 1, 2017

Protein Features Identification For Machine Learning-Based Prediction Of Protein-Protein Interactions

Khalid Raza

This paper surveys protein features used for predicting protein-protein interactions and discusses open research challenges and opportunities in the field.

12 citationstop 5%

protein sequencestatistical model

𝕏 PostBluesky