Author

Ahmed K. Alomari

Indiana University HospitalORCID 0000-0002-3776-5053Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Research Focus:benchmarking· 1 Assay:bulk RNA-seq· 1 Research Focus:cell type annotation· 1 Approach:deep learning· 1 Research Focus:differential expression· 1 Approach:experimental assay· 1 Organism:human· 1 Assay:spatial transcriptomics· 1

Frequent Co-Authors

Jie ZhangiD· 1 shared Justin L. CouetiliD· 1 shared Kun HuangiD· 1 shared Travis S. JohnsoniD· 1 shared Ziyu LiuiD· 1 shared

Activity by Year

2023-2023 · peak 1/yr

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5 top collaborators · 10 mutual co-author links

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1 shared paperBioinformatics

Jie ZhangORCID

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1 paper

Recent·Most cited

Diagnostic Evidence Gauge of Spatial Transcriptomics (DEGAS): Using transfer learning to map clinical data to spatial transcriptomics in prostate cancer

Justin L. Couetil, Ziyu Liu, Ahmed K. Alomari, Jie Zhang, Kun Huang, Travis S. Johnson

The paper introduces DEGAS, a transfer learning framework that maps clinical data to spatial transcriptomics in prostate cancer, identifying transcriptional signatures of carcinogenesis in morphologically normal tissues.

bioRxiv · Apr 21, 2023 · PreprintBioinformatics