Author

Bonnie B. Huang

University of California San DiegoORCID 0000-0002-3820-4565Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Organism:human· 2 Approach:statistical model· 2 Assay:whole-genome sequencing· 2 Research Focus:database / resource· 1 Research Focus:eQTL / molecular QTL mapping· 1 Research Focus:variant calling· 1 Research Focus:variant effect prediction· 1

Frequent Co-Authors

Helyaneh Ziaei JamiD· 2 shared Melissa GymrekiD· 2 shared Mikhail Maksimov· 2 shared Nima MousaviiD· 2 shared Arun DurvasulaiD· 1 shared Blessing OnyidoiD· 1 shared Daudi JjingoiD· 1 shared Egor DolzhenkoiD· 1 shared

Activity by Year

2023-2025 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 40 mutual co-author links

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2 shared papersGenomics

Helyaneh Ziaei JamORCID

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2 papers

Recent·Most cited

Genome-wide selection inference at short tandem repeats

Bonnie B. Huang, Arun Durvasula, Nima Mousavi, Helyaneh Ziaei Jam, Mikhail Maksimov, Kirk E. Lohmueller, Melissa Gymrek

The paper extends SISTR to jointly estimate selection coefficients across STRs, showing variation in mutation and selection parameters and greater selective burden of de novo STR mutations compared to standing variation.

PLoS Genetics · Dec 1, 2025Peer-reviewedGenomics

A deep population reference panel of tandem repeat variation

Helyaneh Ziaei Jam, Yang Li, Ross DeVito, Nima Mousavi, Nichole Ma, Ibra Lujumba, Yagoub Adam, Mikhail Maksimov, Bonnie B. Huang, Egor Dolzhenko, Yunjiang Qiu, Fredrick Elishama Kakembo, Habi Joseph, Blessing Onyido, Jumoke Adeyemi, , Melissa Gymrek

The paper creates a deep population reference panel of tandem repeat variation using whole genome sequencing and develops a method to genotype over 1.7 million TR loci, identifying novel eQTL signals and a phased haplotype panel for imputation.

Nature Communications · Oct 23, 2023Peer-reviewedGenomics