Author

Neringa Jurenaite

Center for Scalable Data Analytics and Artificial IntelligenceORCID 0000-0002-3959-7452Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 1

Signature Assays, Organisms & Methods

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Research Focus:benchmarking· 1 Assay:bulk RNA-seq· 1 Approach:deep learning· 1 Research Focus:dimensionality reduction· 1 Organism:human· 1 Assay:imaging· 1 Assay:spatial transcriptomics· 1

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Dušan PraščevićiD· 1 shared Jan EwaldiD· 1 shared Maximilian Josef JoasiD· 1 shared Nico ScherfiD· 1 shared

Activity by Year

2025-2025 · peak 1/yr

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4 top collaborators · 6 mutual co-author links

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1 shared paperBioinformatics

Dušan PraščevićORCID

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1 paper

Recent·Most cited

BioinformaticsNature Computational SciencePeer-reviewedDec 9, 2025

A generalized and versatile framework to train and evaluate autoencoders for biological representation learning and beyond: AUTOENCODIX

Maximilian Josef Joas, Neringa Jurenaite, Dušan Praščević…·Jan Ewald

AUTOENCODIX provides a standardized framework for training and evaluating autoencoders, demonstrating its utility across multi-modal biological data and offering insights into representation learning trade-offs.

3 citations

humanbulk RNA-seq

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