Author

Henk C. den Bakker

University of GeorgiaORCID 0000-0002-4086-1580Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Approach:statistical model· 2 Assay:whole-genome sequencing· 2 Organism:bacteria (other)· 1 Research Focus:database / resource· 1 Research Focus:ecology & biodiversity· 1 Approach:experimental assay· 1 Assay:long-read sequencing· 1 Assay:metagenomics· 1

Frequent Co-Authors

Alexis M. HamiltoniD· 1 shared Amrit Pal· 1 shared Amy Mann· 1 shared Angela Parra· 1 shared Eduardo P. C. RochaiD· 1 shared Faith J. CritzeriD· 1 shared Gil McVeaniD· 1 shared Laura K. StrawniD· 1 shared

Activity by Year

2019-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 18 mutual co-author links

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1 shared paperMicrobiology

Alexis M. HamiltonORCID

Mutual co-authors in cluster

Author profile →

3 papers

Recent·Most cited

Metagenomic Profiling of Bacterial (16S) and Fungal (ITS) Communities on D'Anjou Pears during Long-Term Controlled Atmosphere Storage

Rawane Raad, Amy Mann, Amrit Pal, Angela Parra, Laura K. Strawn, Alexis M. Hamilton, Faith J. Critzer, Henk C. den Bakker

This study profiles bacterial and fungal communities on D'Anjou pears during long-term storage, showing storage practices and time affect microbial composition and diversity.

Microbiology Spectrum · May 18, 2026Peer-reviewedMicrobiology

Fasten with Pipes

Lee S. Katz, Henk C. den Bakker

Fasten is a bioinformatics tool suite for handling fastq files, supporting interleaved data and Unix pipes, with Rust implementation and command-line integration.

bioRxiv · Oct 30, 2023 · PreprintBioinformatics

Real-time search of all bacterial and viral genomic data

Phelim Bradley, Henk C. den Bakker, Eduardo P. C. Rocha, Gil McVean, Zamin Iqbal

The paper introduces a DNA search engine for microbial genomic data that enables real-time search and analysis of bacterial and viral sequences.

Nature Biotechnology · Feb 1, 2019Peer-reviewedBioinformatics